IL_9DOV_226

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|G|1540
9DOV|1|B5|G|1541
9DOV|1|B5|G|1542
9DOV|1|B5|A|1543
9DOV|1|B5|U|1544
9DOV|1|B5|A|1545
*
9DOV|1|B5|U|1566
9DOV|1|B5|U|1567
9DOV|1|B5|C|1568
9DOV|1|B5|A|1569
9DOV|1|B5|A|1570
9DOV|1|B5|C|1571

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A