IL_9DOV_227

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9DOV|1|B5|C|1637, 9DOV|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_227 not in the Motif Atlas

Homologous match to IL_9PN5_220

Geometric discrepancy: 0.1128

The information below is about IL_9PN5_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9DOV|1|B5|C|1636
9DOV|1|B5|C|1637
9DOV|1|B5|G|1638
*
9DOV|1|B5|C|1764
9DOV|1|B5|A|1765
9DOV|1|B5|A|1766
9DOV|1|B5|G|1767

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

Small ribosomal subunit protein uS5

Chain Ba

Small ribosomal subunit protein eS26B

Chain EC

TSV IRES RNA