IL_9DOV_230
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_230 not in the Motif Atlas
- Geometric match to IL_8CRE_469
- Geometric discrepancy: 0.2893
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_26271.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DOV|1|B5|C|1644
9DOV|1|B5|G|1645
9DOV|1|B5|C|1646
9DOV|1|B5|U|1647
*
9DOV|1|B5|A|1753
9DOV|1|B5|A|1754
9DOV|1|B5|A|1755
9DOV|1|B5|A|1756||A
9DOV|1|B5|G|1757
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- TSV IRES RNA
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