IL_9DP7_205
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGUC*GUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_205 not in the Motif Atlas
- Homologous match to IL_9PN5_200
- Geometric discrepancy: 0.1865
- The information below is about IL_9PN5_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39691.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
9DP7|1|B5|G|1212
9DP7|1|B5|G|1213
9DP7|1|B5|U|1214
9DP7|1|B5|C|1215
*
9DP7|1|B5|G|1448
9DP7|1|B5|U|1449
9DP7|1|B5|U|1450
9DP7|1|B5|C|1451
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BP
- Small ribosomal subunit protein uS19
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain Bf
- RPS31 isoform 1
Coloring options: