IL_9DP7_220
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 9DP7|1|B5|C|1490, 9DP7|1|B5|U|1491, 9DP7|1|B5|A|1516, 9DP7|1|B5|U|1517
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|B5|G|1488
9DP7|1|B5|U|1489
9DP7|1|B5|C|1490
9DP7|1|B5|U|1491
9DP7|1|B5|A|1492
9DP7|1|B5|A|1493
9DP7|1|B5|C|1494
*
9DP7|1|B5|G|1513
9DP7|1|B5|U|1514
9DP7|1|B5|A|1515
9DP7|1|B5|A|1516
9DP7|1|B5|U|1517
9DP7|1|B5|C|1518
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
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