IL_9E0N_029
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E0N_029 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1907
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9E0N|1|A|G|971
9E0N|1|A|A|972
9E0N|1|A|G|973
9E0N|1|A|G|974
9E0N|1|A|U|975
9E0N|1|A|A|976
9E0N|1|A|G|977
*
9E0N|1|A|C|1030
9E0N|1|A|G|1031
9E0N|1|A|A|1032
9E0N|1|A|A|1033
9E0N|1|A|U|1034
9E0N|1|A|G|1035
9E0N|1|A|C|1036
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- Large ribosomal subunit protein uL16
- Chain W
- Large ribosomal subunit protein bL25
- Chain X
- Large ribosomal subunit protein bL27
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