IL_9E0N_038

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_038 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1879

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9E0N|1|A|C|1122
9E0N|1|A|C|1123
9E0N|1|A|C|1124
9E0N|1|A|C|1125
9E0N|1|A|U|1126
9E0N|1|A|A|1127
9E0N|1|A|A|1128
9E0N|1|A|G|1129
*
9E0N|1|A|C|1269
9E0N|1|A|G|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL20