IL_9E0N_047

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9E0N|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_047 not in the Motif Atlas

Geometric match to IL_7EAG_003

Geometric discrepancy: 0.1563

The information below is about IL_7EAG_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9E0N|1|A|C|1322
9E0N|1|A|G|1323
9E0N|1|A|G|1324
9E0N|1|A|U|1325
9E0N|1|A|G|1326
9E0N|1|A|A|1327
9E0N|1|A|A|1328
9E0N|1|A|G|1329
*
9E0N|1|A|U|1349
9E0N|1|A|G|1350
9E0N|1|A|G|1351
9E0N|1|A|A|1352
9E0N|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein bL20