IL_9E0N_051

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

9E0N|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_051 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2205

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9E0N|1|A|G|1434
9E0N|1|A|C|1435
9E0N|1|A|C|1436
9E0N|1|A|A|1437
9E0N|1|A|G|1438
*
9E0N|1|A|C|1446
9E0N|1|A|G|1447
9E0N|1|A|C|1448

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22

Chain U

Large ribosomal subunit protein uL23