IL_9E0N_071

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

9E0N|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_071 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.3007

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9E0N|1|A|C|1930
9E0N|1|A|A|1931
9E0N|1|A|U|1932
9E0N|1|A|G|1933
9E0N|1|A|G|1934
*
9E0N|1|A|U|1960
9E0N|1|A|G|1961
9E0N|1|A|A|1962
9E0N|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains