IL_9E0N_085

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9E0N|1|A|A|2663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_085 not in the Motif Atlas

Geometric match to IL_8P9A_322

Geometric discrepancy: 0.118

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9E0N|1|A|G|2293
9E0N|1|A|A|2294
*
9E0N|1|A|U|2662
9E0N|1|A|A|2663
9E0N|1|A|C|2664
9E0N|1|A|C|2665

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2