IL_9E0N_114

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_114 not in the Motif Atlas

Geometric match to IL_7A0S_100

Geometric discrepancy: 0.3252

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9E0N|1|A|G|3064
9E0N|1|A|A|3065
9E0N|1|A|C|3066
*
9E0N|1|A|G|3092
9E0N|1|A|A|3093
9E0N|1|A|A|3094
9E0N|1|A|C|3095

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain O

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein bL19