IL_9E0P_004

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

9E0P|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_004 not in the Motif Atlas

Geometric match to IL_6UFG_001

Geometric discrepancy: 0.2235

The information below is about IL_6UFG_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9E0P|1|A|G|78
9E0P|1|A|G|79
9E0P|1|A|G|80
9E0P|1|A|A|81
9E0P|1|A|G|82
*
9E0P|1|A|C|95
9E0P|1|A|G|96
9E0P|1|A|U|97
9E0P|1|A|U|98
9E0P|1|A|G|99
9E0P|1|A|A|100
9E0P|1|A|U|101
9E0P|1|A|C|102

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL24

Chain Z

Large ribosomal subunit protein uL29