IL_9E0P_019

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

9E0P|1|A|G|916, 9E0P|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_019 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1768

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|G|789
9E0P|1|A|A|790
9E0P|1|A|A|791
9E0P|1|A|G|792
9E0P|1|A|C|793
*
9E0P|1|A|G|914
9E0P|1|A|U|915
9E0P|1|A|G|916
9E0P|1|A|A|917
9E0P|1|A|U|918
9E0P|1|A|A|919
9E0P|1|A|G|920
9E0P|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain M

Large ribosomal subunit protein uL15