IL_9E0P_041
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9E0P|1|A|U|1245, 9E0P|1|A|U|1248, 9E0P|1|A|G|1249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E0P_041 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1488
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9E0P|1|A|G|1142
9E0P|1|A|G|1143
9E0P|1|A|A|1144
9E0P|1|A|A|1145
9E0P|1|A|A|1146
9E0P|1|A|A|1147
9E0P|1|A|G|1148
*
9E0P|1|A|C|1242
9E0P|1|A|G|1243
9E0P|1|A|A|1244
9E0P|1|A|U|1245
9E0P|1|A|A|1246
9E0P|1|A|A|1247
9E0P|1|A|U|1248
9E0P|1|A|G|1249
9E0P|1|A|U|1250
9E0P|1|A|A|1251
9E0P|1|A|G|1252
9E0P|1|A|C|1253
9E0P|1|A|G|1254
9E0P|1|A|G|1255
9E0P|1|A|G|1256
9E0P|1|A|G|1257
9E0P|1|A|C|1258
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L36
- Chain 8
- 50S ribosomal protein bL37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL3
- Chain K
- Large ribosomal subunit protein uL13
- Chain N
- Large ribosomal subunit protein uL16
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