IL_9E0P_045

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9E0P|1|A|A|1206, 9E0P|1|A|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_045 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3128

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9E0P|1|A|G|1205
9E0P|1|A|A|1206
9E0P|1|A|G|1207
9E0P|1|A|U|1208
9E0P|1|A|G|1209
*
9E0P|1|A|C|1218
9E0P|1|A|U|1219
9E0P|1|A|C|1220

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain I

Large ribosomal subunit protein uL10

Chain J

Large ribosomal subunit protein uL11