IL_9E0P_046

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9E0P|1|A|G|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_046 not in the Motif Atlas

Geometric match to IL_7QQP_008

Geometric discrepancy: 0.2031

The information below is about IL_7QQP_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9E0P|1|A|C|1311
9E0P|1|A|G|1312
9E0P|1|A|U|1313
*
9E0P|1|A|A|1362
9E0P|1|A|G|1363
9E0P|1|A|U|1364
9E0P|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain M

Large ribosomal subunit protein uL15

Chain R

Large ribosomal subunit protein bL20