IL_9E0P_049
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E0P_049 not in the Motif Atlas
- Geometric match to IL_7A0S_045
- Geometric discrepancy: 0.2038
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9E0P|1|A|A|1377
9E0P|1|A|U|1378
9E0P|1|A|G|1379
9E0P|1|A|A|1380
9E0P|1|A|G|1381
9E0P|1|A|U|1382
9E0P|1|A|A|1383
9E0P|1|A|G|1384
*
9E0P|1|A|C|2235
9E0P|1|A|G|2236
9E0P|1|A|A|2237
9E0P|1|A|A|2238
9E0P|1|A|A|2239
9E0P|1|A|U|2240
9E0P|1|A|U|2241
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL4
- Chain R
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein uL22
Coloring options: