IL_9E0P_060

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

9E0P|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_060 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.2238

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9E0P|1|A|G|1653
9E0P|1|A|G|1654
9E0P|1|A|A|1655
9E0P|1|A|A|1656
*
9E0P|1|A|U|1777
9E0P|1|A|A|1778
9E0P|1|A|U|1779
9E0P|1|A|G|1780
9E0P|1|A|C|1781

Current chains

Chain A

23S rRNA

Nearby chains