IL_9E0P_069

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

9E0P|1|A|G|2216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_069 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.1802

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|G|1884
9E0P|1|A|G|1885
9E0P|1|A|A|1886
9E0P|1|A|A|1887
9E0P|1|A|C|1888
9E0P|1|A|U|1889
9E0P|1|A|C|1890
9E0P|1|A|G|1891
9E0P|1|A|G|1892
*
9E0P|1|A|C|2214
9E0P|1|A|U|2215
9E0P|1|A|G|2216
9E0P|1|A|U|2217
9E0P|1|A|C|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein uL14