IL_9E0P_070

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

9E0P|1|A|G|2216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_070 not in the Motif Atlas

Geometric match to IL_8P9A_306

Geometric discrepancy: 0.243

The information below is about IL_8P9A_306

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|A|1887
9E0P|1|A|C|1888
9E0P|1|A|U|1889
9E0P|1|A|C|1890
9E0P|1|A|G|1891
9E0P|1|A|G|1892
*
9E0P|1|A|C|2214
9E0P|1|A|U|2215
9E0P|1|A|G|2216
9E0P|1|A|U|2217

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein uL14