IL_9E0P_072

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

9E0P|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_072 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.2613

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_04785.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9E0P|1|A|C|1930
9E0P|1|A|A|1931
9E0P|1|A|U|1932
9E0P|1|A|G|1933
9E0P|1|A|G|1934
*
9E0P|1|A|U|1960
9E0P|1|A|G|1961
9E0P|1|A|A|1962
9E0P|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains