IL_9E0P_075

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

9E0P|1|A|G|2018, 9E0P|1|A|U|2033, 9E0P|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_075 not in the Motif Atlas

Geometric match to IL_7A0S_065

Geometric discrepancy: 0.1314

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9E0P|1|A|U|2015
9E0P|1|A|G|2016
9E0P|1|A|C|2017
9E0P|1|A|G|2018
9E0P|1|A|A|2019
9E0P|1|A|A|2020
9E0P|1|A|G|2021
*
9E0P|1|A|C|2030
9E0P|1|A|G|2031
9E0P|1|A|A|2032
9E0P|1|A|U|2033
9E0P|1|A|G|2034
9E0P|1|A|U|2035
9E0P|1|A|A|2036
9E0P|1|A|U|2037
9E0P|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA