IL_9E0P_085

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9E0P|1|A|C|2279, 9E0P|1|A|U|2837, 9E0P|1|A|A|2838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_085 not in the Motif Atlas

Geometric match to IL_4V9F_073

Geometric discrepancy: 0.1989

The information below is about IL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9E0P|1|A|A|2278
9E0P|1|A|C|2279
9E0P|1|A|G|2280
*
9E0P|1|A|C|2836
9E0P|1|A|U|2837
9E0P|1|A|A|2838
9E0P|1|A|U|2839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain T

Large ribosomal subunit protein uL22