IL_9E0P_109

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_109 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1498

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9E0P|1|A|C|2876
9E0P|1|A|U|2877
9E0P|1|A|A|2878
9E0P|1|A|G|2879
9E0P|1|A|U|2880
9E0P|1|A|A|2881
9E0P|1|A|C|2882
*
9E0P|1|A|G|2887
9E0P|1|A|G|2888
9E0P|1|A|A|2889
9E0P|1|A|C|2890
9E0P|1|A|C|2891
9E0P|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6