IL_9E0P_110

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9E0P|1|A|C|2950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_110 not in the Motif Atlas

Geometric match to IL_8CRE_445

Geometric discrepancy: 0.1807

The information below is about IL_8CRE_445

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9E0P|1|A|C|2904
9E0P|1|A|C|2905
9E0P|1|A|U|2906
9E0P|1|A|C|2907
9E0P|1|A|U|2908
*
9E0P|1|A|A|2949
9E0P|1|A|C|2950
9E0P|1|A|G|2951

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein uL14

Chain Q

Large ribosomal subunit protein bL19