IL_9E0P_112

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UU*ACGG

Length

6 nucleotides

Bulged bases

9E0P|1|A|C|2936, 9E0P|1|A|G|2937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_112 not in the Motif Atlas

Geometric match to IL_7A0S_097

Geometric discrepancy: 0.1925

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9E0P|1|A|U|2919
9E0P|1|A|U|2920
*
9E0P|1|A|A|2935
9E0P|1|A|C|2936
9E0P|1|A|G|2937
9E0P|1|A|G|2938

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17