IL_9E0P_116

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

9E0P|1|A|C|3088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_116 not in the Motif Atlas

Geometric match to IL_8CRE_139

Geometric discrepancy: 0.1987

The information below is about IL_8CRE_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9E0P|1|A|U|3068
9E0P|1|A|G|3069
9E0P|1|A|G|3070
9E0P|1|A|A|3071
9E0P|1|A|A|3072
9E0P|1|A|G|3073
*
9E0P|1|A|U|3086
9E0P|1|A|G|3087
9E0P|1|A|C|3088
9E0P|1|A|A|3089
9E0P|1|A|G|3090

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein bL19