IL_9E0P_130

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

9E0P|1|a|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_130 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1687

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9E0P|1|a|G|144
9E0P|1|a|G|145
9E0P|1|a|A|146
9E0P|1|a|U|147
9E0P|1|a|A|148
9E0P|1|a|A|149
9E0P|1|a|G|150
*
9E0P|1|a|U|165
9E0P|1|a|C|166
9E0P|1|a|U|167
9E0P|1|a|A|168
9E0P|1|a|A|169
9E0P|1|a|U|170
9E0P|1|a|A|171
9E0P|1|a|C|172

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20