IL_9E0P_151

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

9E0P|1|a|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_151 not in the Motif Atlas

Geometric match to IL_1G1X_003

Geometric discrepancy: 0.1618

The information below is about IL_1G1X_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9E0P|1|a|C|642
9E0P|1|a|A|643
9E0P|1|a|G|644
9E0P|1|a|G|645
9E0P|1|a|G|646
*
9E0P|1|a|U|720
9E0P|1|a|G|721
9E0P|1|a|G|722
9E0P|1|a|G|723

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

Small ribosomal subunit protein bS6

Chain o

Small ribosomal subunit protein uS15

Chain r

Small ribosomal subunit protein bS18B