IL_9E0P_155

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_155 not in the Motif Atlas

Geometric match to IL_8CRE_438

Geometric discrepancy: 0.1442

The information below is about IL_8CRE_438

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9E0P|1|a|C|759
9E0P|1|a|G|760
9E0P|1|a|A|761
9E0P|1|a|A|762
9E0P|1|a|C|763
*
9E0P|1|a|G|779
9E0P|1|a|G|780
9E0P|1|a|U|781
9E0P|1|a|A|782
9E0P|1|a|G|783

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

Small ribosomal subunit protein uS11