IL_9E0P_162

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9E0P|1|a|U|1029

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_162 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.2196

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9E0P|1|a|G|1028
9E0P|1|a|U|1029
9E0P|1|a|G|1030
*
9E0P|1|a|C|1189
9E0P|1|a|C|1190

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B