IL_9E0P_168

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_168 not in the Motif Atlas

Geometric match to IL_3IWN_005

Geometric discrepancy: 0.3152

The information below is about IL_3IWN_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9E0P|1|a|C|1109
9E0P|1|a|A|1110
9E0P|1|a|G|1111
9E0P|1|a|C|1112
*
9E0P|1|a|G|1123
9E0P|1|a|G|1124

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10