IL_9E16_094

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9E16|1|I|A|2677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_094 not in the Motif Atlas

Homologous match to IL_8B0X_143

Geometric discrepancy: 0.0797

The information below is about IL_8B0X_143

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9E16|1|I|G|2307
9E16|1|I|A|2308
*
9E16|1|I|U|2676
9E16|1|I|A|2677
9E16|1|I|C|2678
9E16|1|I|C|2679

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

Ribosome-tunnel occlusion factor (RTOF)

Chain C

50S ribosomal protein L2