IL_9E16_095

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAC*GCGGG

Length

9 nucleotides

Bulged bases

9E16|1|I|G|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_095 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2566

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9E16|1|I|C|2318
9E16|1|I|A|2319
9E16|1|I|A|2320
9E16|1|I|C|2321
*
9E16|1|I|G|2473
9E16|1|I|C|2474
9E16|1|I|G|2475
9E16|1|I|G|2476
9E16|1|I|G|2477

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain n

Transfer RNA; tRNA

Chain y

50S ribosomal protein L28 C-