IL_9E16_106

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_106 not in the Motif Atlas

Homologous match to IL_8B0X_153

Geometric discrepancy: 0.0999

The information below is about IL_8B0X_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9E16|1|I|C|2704
9E16|1|I|C|2705
9E16|1|I|A|2706
9E16|1|I|A|2707
9E16|1|I|G|2708
*
9E16|1|I|C|2718
9E16|1|I|G|2719
9E16|1|I|A|2720
9E16|1|I|C|2721
9E16|1|I|G|2722

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain M

50S ribosomal protein L16