IL_9E16_129

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAU*AG

Length

6 nucleotides

Bulged bases

9E16|1|a|G|125, 9E16|1|a|A|126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_129 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1457

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9E16|1|a|U|124
9E16|1|a|G|125
9E16|1|a|A|126
9E16|1|a|U|127
*
9E16|1|a|A|230
9E16|1|a|G|231

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20