IL_9E16_158

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9E16|1|a|C|927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_158 not in the Motif Atlas

Homologous match to IL_8B0X_040

Geometric discrepancy: 0.1244

The information below is about IL_8B0X_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03866.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9E16|1|a|G|926
9E16|1|a|C|927
9E16|1|a|A|928
*
9E16|1|a|U|1373
9E16|1|a|U|1374
9E16|1|a|C|1375
9E16|1|a|C|1376
9E16|1|a|C|1377

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain X

mRNA

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain n

Transfer RNA; tRNA