IL_9E16_169

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_169 not in the Motif Atlas

Geometric match to IL_8GLP_297

Geometric discrepancy: 0.2941

The information below is about IL_8GLP_297

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27134.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9E16|1|a|A|1113
9E16|1|a|U|1114
9E16|1|a|G|1115
*
9E16|1|a|C|1141
9E16|1|a|G|1142
9E16|1|a|U|1143

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10