IL_9E1S_038
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E1S_038 not in the Motif Atlas
- Homologous match to IL_8B0X_090
- Geometric discrepancy: 0.0773
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9E1S|1|I|G|985
9E1S|1|I|A|986
9E1S|1|I|G|987
9E1S|1|I|G|988
9E1S|1|I|U|989
9E1S|1|I|A|990
9E1S|1|I|G|991
*
9E1S|1|I|C|1044
9E1S|1|I|G|1045
9E1S|1|I|A|1046
9E1S|1|I|A|1047
9E1S|1|I|U|1048
9E1S|1|I|G|1049
9E1S|1|I|C|1050
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
Coloring options: