IL_9E1S_048

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

9E1S|1|I|C|1271, 9E1S|1|I|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_048 not in the Motif Atlas

Homologous match to IL_8B0X_100

Geometric discrepancy: 0.0703

The information below is about IL_8B0X_100

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9E1S|1|I|C|1147
9E1S|1|I|U|1148
9E1S|1|I|A|1149
9E1S|1|I|A|1150
9E1S|1|I|G|1151
9E1S|1|I|U|1152
9E1S|1|I|G|1153
*
9E1S|1|I|C|1269
9E1S|1|I|U|1270
9E1S|1|I|C|1271
9E1S|1|I|A|1272
9E1S|1|I|A|1273
9E1S|1|I|G|1274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein bL36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13