IL_9E1S_053

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9E1S|1|I|G|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_053 not in the Motif Atlas

Homologous match to IL_8B0X_105

Geometric discrepancy: 0.1146

The information below is about IL_8B0X_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9E1S|1|I|C|1328
9E1S|1|I|G|1329
9E1S|1|I|U|1330
*
9E1S|1|I|A|1378
9E1S|1|I|G|1379
9E1S|1|I|U|1380
9E1S|1|I|G|1381

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20