IL_9E1S_055
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E1S_055 not in the Motif Atlas
- Homologous match to IL_8B0X_108
- Geometric discrepancy: 0.0866
- The information below is about IL_8B0X_108
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9E1S|1|I|A|1393
9E1S|1|I|U|1394
9E1S|1|I|G|1395
9E1S|1|I|A|1396
9E1S|1|I|G|1397
9E1S|1|I|U|1398
9E1S|1|I|A|1399
9E1S|1|I|G|1400
*
9E1S|1|I|C|2249
9E1S|1|I|G|2250
9E1S|1|I|A|2251
9E1S|1|I|A|2252
9E1S|1|I|A|2253
9E1S|1|I|U|2254
9E1S|1|I|U|2255
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain 1
- Ribosomal tunnel occlusion factor-RTOF
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
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