IL_9E1S_061

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GUA*UU

Length

5 nucleotides

Bulged bases

9E1S|1|I|U|1567

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_061 not in the Motif Atlas

Geometric match to IL_3MXH_003

Geometric discrepancy: 0.3446

The information below is about IL_3MXH_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9E1S|1|I|G|1566
9E1S|1|I|U|1567
9E1S|1|I|A|1568
*
9E1S|1|I|U|1636
9E1S|1|I|U|1637

Current chains

Chain I

23S ribosomal RNA

Nearby chains