IL_9E1S_085
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UGCGAAG*CGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9E1S|1|I|G|2035, 9E1S|1|I|U|2050, 9E1S|1|I|U|2054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E1S_085 not in the Motif Atlas
- Homologous match to IL_8B0X_132
- Geometric discrepancy: 0.2344
- The information below is about IL_8B0X_132
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9E1S|1|I|U|2032
9E1S|1|I|G|2033
9E1S|1|I|C|2034
9E1S|1|I|G|2035
9E1S|1|I|A|2036
9E1S|1|I|A|2037
9E1S|1|I|G|2038
*
9E1S|1|I|C|2047
9E1S|1|I|G|2048
9E1S|1|I|A|2049
9E1S|1|I|U|2050
9E1S|1|I|G|2051
9E1S|1|I|U|2052
9E1S|1|I|A|2053
9E1S|1|I|U|2054
9E1S|1|I|A|2055
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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