IL_9E1S_098

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CAAC*GCGGG

Length

9 nucleotides

Bulged bases

9E1S|1|I|G|2476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_098 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.253

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9E1S|1|I|C|2318
9E1S|1|I|A|2319
9E1S|1|I|A|2320
9E1S|1|I|C|2321
*
9E1S|1|I|G|2473
9E1S|1|I|C|2474
9E1S|1|I|G|2475
9E1S|1|I|G|2476
9E1S|1|I|G|2477

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

50S ribosomal protein bL28-c minus