IL_9E1S_116

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_116 not in the Motif Atlas

Homologous match to IL_8B0X_161

Geometric discrepancy: 0.06

The information below is about IL_8B0X_161

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9E1S|1|I|C|2890
9E1S|1|I|U|2891
9E1S|1|I|A|2892
9E1S|1|I|G|2893
9E1S|1|I|U|2894
9E1S|1|I|A|2895
9E1S|1|I|C|2896
*
9E1S|1|I|G|2901
9E1S|1|I|G|2902
9E1S|1|I|A|2903
9E1S|1|I|C|2904
9E1S|1|I|C|2905
9E1S|1|I|G|2906

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6