IL_9E6Q_004
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGUAG*CUUAGAAC
- Length
- 13 nucleotides
- Bulged bases
- 9E6Q|1|1|A|92
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_004 not in the Motif Atlas
- Homologous match to IL_4V9F_004
- Geometric discrepancy: 0.2252
- The information below is about IL_4V9F_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9E6Q|1|1|G|73
9E6Q|1|1|G|74
9E6Q|1|1|U|75
9E6Q|1|1|A|76
9E6Q|1|1|G|77
*
9E6Q|1|1|C|89
9E6Q|1|1|U|90
9E6Q|1|1|U|91
9E6Q|1|1|A|92
9E6Q|1|1|G|93
9E6Q|1|1|A|94
9E6Q|1|1|A|95
9E6Q|1|1|C|96
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AV
- Large ribosomal subunit protein uL24
- Chain AX
- Large ribosomal subunit protein uL29
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