IL_9E6Q_007

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9E6Q|1|1|U|220
9E6Q|1|1|G|221
9E6Q|1|1|A|222
9E6Q|1|1|G|223
9E6Q|1|1|U|224
9E6Q|1|1|A|225
9E6Q|1|1|G|226
*
9E6Q|1|1|C|234
9E6Q|1|1|G|235
9E6Q|1|1|A|236
9E6Q|1|1|A|237
9E6Q|1|1|A|238
9E6Q|1|1|G|239

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein eL13

Chain AL

Large ribosomal subunit protein uL15