IL_9E6Q_018
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAAC*GGGUGAAAAGAGC
- Length
- 17 nucleotides
- Bulged bases
- 9E6Q|1|1|G|537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_018 not in the Motif Atlas
- Geometric match to IL_4WF9_015
- Geometric discrepancy: 0.1637
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9E6Q|1|1|G|512
9E6Q|1|1|A|513
9E6Q|1|1|A|514
9E6Q|1|1|C|515
*
9E6Q|1|1|G|526
9E6Q|1|1|G|527
9E6Q|1|1|G|528
9E6Q|1|1|U|529
9E6Q|1|1|G|530
9E6Q|1|1|A|531
9E6Q|1|1|A|532
9E6Q|1|1|A|533
9E6Q|1|1|A|534
9E6Q|1|1|G|535
9E6Q|1|1|A|536
9E6Q|1|1|G|537
9E6Q|1|1|C|538
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AT
- Large ribosomal subunit protein uL22
- Chain AV
- Large ribosomal subunit protein uL24
- Chain Af
- Large ribosomal subunit protein eL39
Coloring options: